Variant report

Variant	rs4855386
Chromosome Location	chr3:69354906-69354907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69221873..69224471-chr3:69354670..69357098,2	MCF-7	breast:
2	chr3:69210554..69213653-chr3:69354027..69357404,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13061745	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13063137	0.83[ASN][1000 genomes]
rs13066342	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13067464	0.82[EUR][1000 genomes]
rs13097295	0.83[ASN][1000 genomes]
rs35787059	0.82[EUR][1000 genomes]
rs4855385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66514154	0.80[EUR][1000 genomes]
rs7651462	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876935	chr3:69307942-69401248	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69331600-69355400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:69338200-69355800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:69339600-69355800	Weak transcription	Spleen	Spleen
4	chr3:69339600-69357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:69342000-69355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:69343800-69362200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:69344000-69355400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:69344000-69355400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:69344000-69370000	Weak transcription	Fetal Brain Male	brain
10	chr3:69344000-69370000	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:69344600-69355800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:69346800-69356800	Weak transcription	Thymus	Thymus
13	chr3:69347800-69357600	Weak transcription	Fetal Stomach	stomach
14	chr3:69348000-69356600	Weak transcription	Lung	lung
15	chr3:69348000-69369400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:69349200-69355400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:69349200-69368800	Weak transcription	Fetal Brain Female	brain
18	chr3:69349400-69355400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:69349600-69356800	Weak transcription	Fetal Thymus	thymus
20	chr3:69350000-69355000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:69350000-69355400	Weak transcription	HSMMtube	muscle
22	chr3:69350000-69374200	Weak transcription	Aorta	Aorta
23	chr3:69350600-69357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:69351400-69355400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:69351600-69355200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:69351600-69355400	Weak transcription	Fetal Heart	heart
27	chr3:69351600-69356800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:69351800-69355400	Weak transcription	HSMM	muscle
29	chr3:69351800-69355600	Weak transcription	Fetal Lung	lung
30	chr3:69351800-69355800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr3:69351800-69355800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:69352000-69355400	Weak transcription	HMEC	breast
33	chr3:69352000-69356800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:69352400-69357000	Weak transcription	Dnd41	blood
35	chr3:69353600-69355200	Strong transcription	Primary hematopoietic stem cells	blood
36	chr3:69353600-69356000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:69353800-69355200	Enhancers	Brain Angular Gyrus	brain
38	chr3:69353800-69355400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:69353800-69356200	Enhancers	HUVEC	blood vessel
40	chr3:69353800-69356400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:69353800-69357400	Enhancers	Brain Anterior Caudate	brain
42	chr3:69354000-69356000	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:69354000-69356000	Genic enhancers	NHEK	skin
44	chr3:69354000-69356200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:69354200-69355800	Weak transcription	Osteobl	bone
46	chr3:69354400-69355400	Weak transcription	Brain Hippocampus Middle	brain
47	chr3:69354400-69356200	Weak transcription	Fetal Intestine Small	intestine
48	chr3:69354600-69356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:69354600-69357600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr3:69354800-69355200	Weak transcription	Brain Substantia Nigra	brain

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