Variant report

Variant	rs4855816
Chromosome Location	chr3:88964208-88964209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11128061	0.82[EUR][1000 genomes]
rs13321295	0.89[EUR][1000 genomes]
rs1483479	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1483480	0.80[EUR][1000 genomes]
rs4241402	0.82[EUR][1000 genomes]
rs4241403	0.82[EUR][1000 genomes]
rs4301012	0.87[EUR][1000 genomes]
rs4377496	0.80[EUR][1000 genomes]
rs4855790	0.82[EUR][1000 genomes]
rs4855811	0.82[EUR][1000 genomes]
rs6551372	0.81[EUR][1000 genomes]
rs6773197	0.81[EUR][1000 genomes]
rs6792929	0.82[EUR][1000 genomes]
rs6805311	0.82[EUR][1000 genomes]
rs7434092	0.84[EUR][1000 genomes]
rs7615019	0.84[EUR][1000 genomes]
rs7621168	0.84[EUR][1000 genomes]
rs7625470	0.92[EUR][1000 genomes]
rs7630500	0.84[EUR][1000 genomes]
rs9827227	0.82[EUR][1000 genomes]
rs9869106	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877157	chr3:88690163-88974863	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2763285	chr3:88943041-88985151	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88961800-88965600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:88962400-88967800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:88962600-88968000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:88963400-88967600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:88963600-88971400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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