Variant report

Variant	rs4856326
Chromosome Location	chr3:79816164-79816165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:79805055..79807269-chr3:79815015..79816845,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12632490	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4856328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877021	chr3:79560604-79892470	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877025	chr3:79710734-79841763	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877026	chr3:79720785-79918274	Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv999796	chr3:79762461-79938163	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79814000-79818000	Active TSS	Fetal Brain Female	brain
2	chr3:79815000-79817600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:79815200-79816200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
4	chr3:79815200-79816400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:79815200-79816800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
6	chr3:79815200-79817000	Bivalent/Poised TSS	NH-A	brain
7	chr3:79815200-79817200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr3:79815200-79817400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr3:79815400-79816200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
10	chr3:79815400-79816200	Flanking Active TSS	Ovary	ovary
11	chr3:79815400-79816400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:79815400-79816400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
13	chr3:79815400-79816600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr3:79815400-79816600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:79815400-79816600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:79815400-79816600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
17	chr3:79815400-79816800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:79815400-79816800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
19	chr3:79815400-79817000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:79815400-79817200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
21	chr3:79815400-79817400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:79815600-79816200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:79815600-79816200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr3:79815600-79816200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:79815600-79816200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
26	chr3:79815600-79816200	Bivalent/Poised TSS	Right Ventricle	heart
27	chr3:79815600-79816400	Bivalent Enhancer	Liver	Liver
28	chr3:79815600-79816400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
29	chr3:79815600-79816600	Enhancers	Spleen	Spleen
30	chr3:79815600-79816800	Bivalent Enhancer	Left Ventricle	heart
31	chr3:79815600-79817000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:79815600-79817000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
33	chr3:79815600-79817000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:79815600-79817000	Bivalent Enhancer	Adipose Nuclei	Adipose
35	chr3:79815600-79817200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:79815600-79817400	Bivalent/Poised TSS	Fetal Kidney	kidney
37	chr3:79815600-79817600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr3:79815600-79817600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:79815600-79817600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
40	chr3:79815600-79817600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr3:79815600-79817600	Active TSS	Brain Angular Gyrus	brain
42	chr3:79815800-79816200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
43	chr3:79815800-79816200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
44	chr3:79815800-79816200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
45	chr3:79815800-79816600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:79815800-79816800	Bivalent/Poised TSS	Fetal Thymus	thymus
47	chr3:79815800-79817000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr3:79815800-79817000	Enhancers	Pancreas	Pancrea
49	chr3:79815800-79817200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:79815800-79817200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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