Variant report

Variant	rs4856329
Chromosome Location	chr3:79817894-79817895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1463894	1.00[AFR][1000 genomes]
rs1502287	1.00[AFR][1000 genomes]
rs7645823	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877021	chr3:79560604-79892470	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877025	chr3:79710734-79841763	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877026	chr3:79720785-79918274	Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv999796	chr3:79762461-79938163	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79814000-79818000	Active TSS	Fetal Brain Female	brain
2	chr3:79817400-79818400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:79817600-79818000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr3:79817600-79818600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr3:79817600-79818600	Enhancers	Fetal Brain Male	brain
6	chr3:79817800-79818000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
7	chr3:79817800-79818000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr3:79817800-79818200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr3:79817800-79818800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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