Variant report

Variant	rs4856407
Chromosome Location	chr3:82691680-82691681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1007414	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1124561	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11920781	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11924454	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11924506	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632124	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12635513	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1454266	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1477831	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1477835	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1585628	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1824707	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2035185	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2198545	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35123289	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35393421	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35768197	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4856413	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56357940	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6548834	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6806513	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7612784	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7622681	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7623028	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7645133	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7647242	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs834863	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs834879	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs834880	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs834882	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs834886	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv980015	chr3:82687963-82707181	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3063	chr3:82691236-82691692	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82689400-82692800	Enhancers	HMEC	breast
2	chr3:82689800-82692600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:82690200-82691800	Enhancers	NHEK	skin

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