Variant report

Variant	rs4858441
Chromosome Location	chr3:22733694-22733695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1124915	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1608625	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1608626	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2049391	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4858047	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4858439	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4858440	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4858448	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1012343	chr3:22560733-22811382	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589946	chr3:22600086-22865347	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1007224	chr3:22612682-22809139	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536522	chr3:22612682-22809139	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1011446	chr3:22612682-22864885	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1837373	chr3:22723578-22737463	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22732400-22733800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:22732400-22734000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:22732400-22734200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:22732400-22734600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:22732800-22734000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:22732800-22734600	Enhancers	Fetal Lung	lung
7	chr3:22733000-22734200	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:22733000-22734400	Enhancers	Colon Smooth Muscle	Colon
9	chr3:22733200-22733800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:22733600-22734400	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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