Variant report

Variant	rs4858590
Chromosome Location	chr3:24260363-24260364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24259435..24261786-chr3:24263751..24265876,2	K562	blood:
2	chr3:24258383..24262308-chr3:24263138..24268304,6	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11706295	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11721037	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13064080	0.88[AMR][1000 genomes]
rs13082827	0.83[EUR][1000 genomes]
rs2017200	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9811853	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9882447	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:24246000-24260400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24246400-24264400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:24251400-24279200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:24252200-24262000	Weak transcription	Fetal Intestine Large	intestine
6	chr3:24252400-24276400	Weak transcription	HepG2	liver
7	chr3:24254800-24261600	Weak transcription	Left Ventricle	heart
8	chr3:24254800-24261800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:24255000-24262200	Weak transcription	Adipose Nuclei	Adipose
10	chr3:24255000-24268000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:24255200-24260600	Weak transcription	HSMMtube	muscle
12	chr3:24255800-24261200	Weak transcription	NHDF-Ad	bronchial
13	chr3:24255800-24261600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:24255800-24262400	Weak transcription	Right Atrium	heart
15	chr3:24256200-24261200	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:24256200-24261800	Weak transcription	Lung	lung
17	chr3:24256200-24263800	Weak transcription	Aorta	Aorta
18	chr3:24256400-24260600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:24256400-24262800	Weak transcription	Liver	Liver
20	chr3:24256800-24260600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:24257000-24261600	Weak transcription	Psoas Muscle	Psoas
22	chr3:24257400-24274000	Weak transcription	Pancreas	Pancrea
23	chr3:24257800-24261600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:24259000-24260800	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:24260000-24260800	Weak transcription	HSMM	muscle
26	chr3:24260000-24264800	Enhancers	NHEK	skin
27	chr3:24260200-24261800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr3:24260200-24263000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr3:24260200-24264800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:24260200-24265000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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