Variant report

Variant	rs4858667
Chromosome Location	chr3:24986891-24986892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24984996..24987861-chr3:24992367..24994337,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12330519	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12629369	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12638313	0.89[EUR][1000 genomes]
rs12715064	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13098681	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2363523	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2363524	0.83[AMR][1000 genomes]
rs2363525	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2363526	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2363528	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4368469	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4858669	0.81[AMR][1000 genomes]
rs6792021	0.82[AMR][1000 genomes]
rs6798808	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7614721	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7614855	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7637559	0.86[EUR][1000 genomes]
rs7648839	0.83[AMR][1000 genomes]
rs937269	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9812847	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9833261	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9843826	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9845970	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9847199	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9872534	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9878781	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9881799	0.83[AMR][1000 genomes]
rs9882350	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9883836	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460482	chr3:24966768-25071616	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589954	chr3:24966768-25071616	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1008974	chr3:24968434-24992497	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24979200-24998400	Weak transcription	Right Atrium	heart
2	chr3:24986800-24987000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:24986800-24987400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links