Variant report

Variant	rs4858697
Chromosome Location	chr3:25116582-25116583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10510554	0.83[EUR][1000 genomes]
rs12629972	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12630658	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12632128	0.84[EUR][1000 genomes]
rs12638455	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4353774	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4858696	0.82[EUR][1000 genomes]
rs6767671	0.84[EUR][1000 genomes]
rs6804842	0.85[EUR][1000 genomes]
rs6808550	0.83[EUR][1000 genomes]
rs7429279	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7619139	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4858697	LRRC3B	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25115600-25117000	Enhancers	Fetal Heart	heart
2	chr3:25115600-25117400	Enhancers	Fetal Lung	lung
3	chr3:25115800-25117000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:25115800-25117000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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