The 2.0 version of rSNPBase

Variant report

Variant rs4858765
Chromosome Location chr3:20143586-20143587
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:20116400-20194800 Weak transcription NHDF-Ad bronchial
2 chr3:20123000-20153000 Weak transcription Fetal Muscle Trunk muscle
3 chr3:20123200-20153200 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr3:20128200-20175800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr3:20131800-20153000 Weak transcription Fetal Adrenal Gland Adrenal Gland
6 chr3:20132800-20152400 Weak transcription Stomach Smooth Muscle stomach
7 chr3:20134600-20145400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr3:20135200-20145800 Weak transcription Fetal Brain Female brain
9 chr3:20135200-20173800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr3:20136200-20145400 Strong transcription Fetal Thymus thymus
11 chr3:20136600-20143800 Strong transcription Primary monocytes fromperipheralblood blood
12 chr3:20137000-20150000 Weak transcription K562 blood
13 chr3:20137400-20156600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr3:20137600-20153000 Weak transcription Spleen Spleen
15 chr3:20137800-20145200 Weak transcription GM12878-XiMat blood
16 chr3:20137800-20150200 Weak transcription Lung lung
17 chr3:20137800-20150200 Weak transcription Right Ventricle heart
18 chr3:20137800-20153000 Weak transcription Esophagus oesophagus
19 chr3:20137800-20153000 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr3:20137800-20153200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr3:20138000-20145400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr3:20138000-20145600 Weak transcription Primary hematopoietic stem cells blood
23 chr3:20138000-20150400 Weak transcription Fetal Intestine Large intestine
24 chr3:20138000-20152800 Weak transcription Duodenum Mucosa Duodenum
25 chr3:20138000-20153000 Weak transcription Aorta Aorta
26 chr3:20138000-20153000 Weak transcription Fetal Muscle Leg muscle
27 chr3:20138800-20148000 Enhancers Cortex derived primary cultured neurospheres brain
28 chr3:20138800-20152600 Weak transcription Colon Smooth Muscle Colon
29 chr3:20138800-20156400 Weak transcription Rectal Smooth Muscle rectum
30 chr3:20139000-20152800 Weak transcription Liver Liver
31 chr3:20139000-20152800 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr3:20139000-20164000 Weak transcription Small Intestine intestine
33 chr3:20139800-20147400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
34 chr3:20139800-20161000 Weak transcription Fetal Intestine Small intestine
35 chr3:20140200-20143600 Enhancers Brain Hippocampus Middle brain
36 chr3:20140400-20145600 Enhancers Primary T regulatory cells fromperipheralblood blood
37 chr3:20140600-20148600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
38 chr3:20141000-20150200 Weak transcription Fetal Stomach stomach
39 chr3:20141000-20153200 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr3:20141200-20144600 Weak transcription Primary T cells fromperipheralblood blood
41 chr3:20141200-20145000 Weak transcription Thymus Thymus
42 chr3:20141200-20145600 Weak transcription Placenta Placenta
43 chr3:20141200-20150200 Weak transcription Pancreas Pancrea
44 chr3:20141200-20153000 Weak transcription Fetal Lung lung
45 chr3:20141200-20167400 Weak transcription HSMMtube muscle
46 chr3:20141200-20222400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr3:20141600-20143800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
48 chr3:20141800-20153000 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr3:20141800-20153000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr3:20142000-20144000 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015