Variant report

Variant	rs4859404
Chromosome Location	chr4:76639631-76639632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76633806..76638911-chr4:76639388..76643502,4	K562	blood:
2	chr4:76638278..76640876-chr4:76648075..76651719,4	K562	blood:

Variant related genes	Relation type
ENSG00000138768	Chromatin interaction
ENSG00000138757	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10016782	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10028291	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10031616	0.84[EUR][1000 genomes]
rs11097075	0.84[EUR][1000 genomes]
rs11097112	0.81[EUR][1000 genomes]
rs11097113	0.81[EUR][1000 genomes]
rs11730896	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11932454	0.87[EUR][1000 genomes]
rs11938067	0.84[EUR][1000 genomes]
rs11943497	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12505149	0.81[EUR][1000 genomes]
rs13102733	0.83[EUR][1000 genomes]
rs13110602	0.80[EUR][1000 genomes]
rs13133144	0.84[EUR][1000 genomes]
rs13147276	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2869175	0.84[EUR][1000 genomes]
rs4859405	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859406	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4859408	0.82[EUR][1000 genomes]
rs4859549	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4859552	0.82[EUR][1000 genomes]
rs4859554	0.81[EUR][1000 genomes]
rs4859555	0.81[EUR][1000 genomes]
rs6531901	0.84[EUR][1000 genomes]
rs6829993	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6847333	0.84[EUR][1000 genomes]
rs7655464	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7661037	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7665517	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs987561	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1003516	chr4:76597112-76729576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv537143	chr4:76597112-76729576	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76599200-76640000	Weak transcription	Aorta	Aorta
2	chr4:76599600-76639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:76599600-76639800	Weak transcription	Brain Angular Gyrus	brain
4	chr4:76599600-76639800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:76599600-76647600	Weak transcription	Fetal Brain Female	brain
6	chr4:76600400-76640000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:76607400-76640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:76615600-76639800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:76615600-76639800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:76616000-76640000	Weak transcription	Lung	lung
11	chr4:76620000-76640000	Weak transcription	Brain Germinal Matrix	brain
12	chr4:76620600-76640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:76621000-76640600	Weak transcription	Right Ventricle	heart
14	chr4:76621800-76642400	Weak transcription	Left Ventricle	heart
15	chr4:76622200-76639800	Weak transcription	HSMMtube	muscle
16	chr4:76623800-76647600	Weak transcription	Fetal Heart	heart
17	chr4:76624200-76640600	Weak transcription	Fetal Thymus	thymus
18	chr4:76624400-76647200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:76624400-76647800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:76624600-76646800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:76624800-76647600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr4:76628000-76639800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:76628600-76640000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:76628800-76642200	Weak transcription	Fetal Stomach	stomach
25	chr4:76629200-76640000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:76629200-76640400	Weak transcription	HepG2	liver
27	chr4:76629400-76640000	Weak transcription	Fetal Lung	lung
28	chr4:76631000-76642000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:76631000-76643600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:76631000-76648800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:76631600-76648000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:76631800-76639800	Weak transcription	Osteobl	bone
33	chr4:76632200-76640200	Weak transcription	NH-A	brain
34	chr4:76633600-76639800	Weak transcription	Brain Anterior Caudate	brain
35	chr4:76633600-76641000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:76633600-76642200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr4:76633600-76642600	Weak transcription	Fetal Intestine Large	intestine
38	chr4:76633600-76643800	Weak transcription	Primary T cells from cord blood	blood
39	chr4:76633600-76647000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr4:76633600-76648200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr4:76633800-76640000	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:76633800-76640600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:76633800-76640600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:76633800-76640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:76633800-76643600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:76633800-76648000	Weak transcription	Fetal Kidney	kidney
47	chr4:76634000-76640000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:76634000-76640800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:76634000-76647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:76634000-76647800	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links