Variant report

Variant	rs4859688
Chromosome Location	chr4:77439979-77439980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10031136	0.80[GIH][hapmap]
rs13152154	0.80[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757069	chr4:77392092-77455405	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4859688	CCDC158	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77420400-77455800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77433600-77440200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:77433600-77447600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:77434200-77447000	Weak transcription	Pancreas	Pancrea
5	chr4:77435600-77442400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:77435600-77442600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:77436600-77455800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:77438600-77442800	Weak transcription	Liver	Liver
9	chr4:77438600-77456800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:77439200-77440200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:77439200-77440200	Enhancers	Fetal Heart	heart
12	chr4:77439200-77444200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:77439400-77440200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:77439400-77440200	Enhancers	Fetal Kidney	kidney
15	chr4:77439400-77440200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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