Variant report

Variant	rs4859816
Chromosome Location	chr4:78264254-78264255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10518170	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518171	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518175	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646036	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12651366	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17002495	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17002506	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17395353	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17401246	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17401714	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2016783	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2216633	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28501511	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34234821	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4340815	0.90[ASN][1000 genomes]
rs4416501	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4460017	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4501251	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4594746	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4859480	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859489	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4859767	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859769	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859778	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859806	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56942936	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57035249	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57593446	0.84[AFR][1000 genomes]
rs57885133	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60011597	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61454994	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs736601	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73827328	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73827341	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003383	chr4:78170317-78265687	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1002683	chr4:78170317-78281331	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1000447	chr4:78191608-78291173	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3468255	chr4:78237484-78277631	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv5935	chr4:78237568-78277734	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3468256	chr4:78237627-78277552	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78263000-78264400	ZNF genes & repeats	NHEK	skin
2	chr4:78263000-78265000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:78264200-78265200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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