Variant report

Variant	rs4859933
Chromosome Location	chr4:75952499-75952500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:75944867..75947402-chr4:75952423..75954134,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10020755	0.90[ASN][1000 genomes]
rs1062293	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11725966	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11727003	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16997586	0.84[ASW][hapmap];0.89[YRI][hapmap]
rs17000109	0.89[YRI][hapmap]
rs2033056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775530	0.83[ASW][hapmap]
rs919052	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4859933	PARM1	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75930400-75953000	Weak transcription	Right Atrium	heart
2	chr4:75938400-75952800	Weak transcription	Brain Anterior Caudate	brain
3	chr4:75938800-75962000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:75940000-75976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:75940200-75953000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:75941000-75959000	Weak transcription	Aorta	Aorta
7	chr4:75942000-75956000	Weak transcription	Adipose Nuclei	Adipose
8	chr4:75942800-75952800	Weak transcription	Left Ventricle	heart
9	chr4:75942800-75962200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:75944200-75956200	Weak transcription	Colonic Mucosa	Colon
11	chr4:75944200-75971000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:75945800-75955600	Weak transcription	GM12878-XiMat	blood
13	chr4:75949800-75963600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:75950200-75952800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:75950600-75954800	Weak transcription	Fetal Intestine Large	intestine
16	chr4:75950800-75952600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:75951000-75954200	Weak transcription	Fetal Intestine Small	intestine
18	chr4:75951000-75954200	Weak transcription	Pancreas	Pancrea
19	chr4:75951000-75955400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:75951200-75955600	Weak transcription	Stomach Mucosa	stomach
21	chr4:75951600-75952800	Weak transcription	Fetal Heart	heart
22	chr4:75951800-75965200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:75952200-75953200	Enhancers	Right Ventricle	heart
24	chr4:75952200-75954400	Strong transcription	Fetal Muscle Leg	muscle
25	chr4:75952400-75953800	Enhancers	Sigmoid Colon	Sigmoid Colon

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