Variant report
| Variant | rs4860451 |
|---|---|
| Chromosome Location | chr4:62989147-62989148 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10008066 | 0.82[EUR][1000 genomes] |
| rs10009372 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10033607 | 0.84[EUR][1000 genomes] |
| rs11930426 | 0.84[EUR][1000 genomes] |
| rs11944228 | 0.84[EUR][1000 genomes] |
| rs12500654 | 0.84[EUR][1000 genomes] |
| rs12507188 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13121574 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1990691 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2216195 | 0.83[EUR][1000 genomes] |
| rs2287146 | 0.88[AMR][1000 genomes] |
| rs28819240 | 0.84[EUR][1000 genomes] |
| rs6551676 | 0.84[EUR][1000 genomes] |
| rs6551680 | 0.82[EUR][1000 genomes] |
| rs6551681 | 0.82[EUR][1000 genomes] |
| rs6810664 | 0.83[EUR][1000 genomes] |
| rs6827497 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6833025 | 0.84[EUR][1000 genomes] |
| rs6848354 | 0.84[EUR][1000 genomes] |
| rs6857895 | 0.84[EUR][1000 genomes] |
| rs7662331 | 0.81[EUR][1000 genomes] |
| rs7677634 | 0.82[EUR][1000 genomes] |
| rs7682584 | 0.82[EUR][1000 genomes] |
| rs7697748 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs950313 | 0.83[EUR][1000 genomes] |
| rs9999509 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879078 | chr4:62923797-63054757 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv594332 | chr4:62976756-63034074 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1005620 | chr4:62978115-63035387 | Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription | TF binding regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:62985600-62991200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
