Variant report

Variant	rs4865164
Chromosome Location	chr4:57765132-57765133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1002285	0.90[EUR][1000 genomes]
rs10032625	0.80[AMR][1000 genomes]
rs1708762	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1708764	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1708788	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1713985	0.90[EUR][1000 genomes]
rs1713992	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1718828	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4280804	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4865163	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62310289	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs781546	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs781547	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs781548	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs781550	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs781655	0.83[EUR][1000 genomes]
rs796680	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs796681	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs802920	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57761600-57773000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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