Variant report

Variant	rs4865172
Chromosome Location	chr4:57907587-57907588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10866440	0.91[CEU][hapmap]
rs10866441	0.88[CEU][hapmap]
rs1105434	0.88[CEU][hapmap]
rs11133472	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11133473	0.89[EUR][1000 genomes]
rs11133474	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11736869	0.84[CEU][hapmap]
rs12500454	0.88[CEU][hapmap]
rs13108245	0.88[CEU][hapmap]
rs17087411	0.83[JPT][hapmap]
rs17087414	0.82[JPT][hapmap]
rs1877669	0.88[CEU][hapmap]
rs2412772	0.92[CEU][hapmap]
rs3000	0.88[CEU][hapmap]
rs3755906	0.81[CEU][hapmap]
rs6554398	0.88[CEU][hapmap]
rs6838948	0.88[CEU][hapmap]
rs6852110	0.88[CEU][hapmap]
rs7680734	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57863400-57907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:57889000-57910200	Weak transcription	Esophagus	oesophagus
3	chr4:57892000-57908200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:57892200-57908000	Weak transcription	Pancreas	Pancrea
5	chr4:57893800-57908000	Weak transcription	Aorta	Aorta
6	chr4:57896800-57909200	Weak transcription	Psoas Muscle	Psoas
7	chr4:57898000-57909800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:57898200-57908000	Weak transcription	Fetal Lung	lung
9	chr4:57898200-57910000	Weak transcription	Lung	lung
10	chr4:57898800-57908000	Weak transcription	NHDF-Ad	bronchial
11	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:57899200-57914600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:57899400-57909800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:57899600-57909800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:57899600-57913000	Weak transcription	Fetal Intestine Small	intestine
17	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:57899800-57909400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:57902600-57908400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:57903600-57909000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:57904400-57908000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:57904400-57910200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:57904600-57908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:57904600-57909200	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:57904600-57909200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:57904600-57909800	Weak transcription	Brain Anterior Caudate	brain
27	chr4:57904800-57908800	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:57904800-57912200	Weak transcription	Brain Angular Gyrus	brain
29	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:57905200-57908600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:57905600-57908000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:57905800-57908000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:57905800-57908000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:57905800-57908200	Weak transcription	NHLF	lung
35	chr4:57905800-57908400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:57905800-57909000	Weak transcription	Placenta	Placenta
37	chr4:57906200-57907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:57906400-57907600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:57906400-57908400	Enhancers	A549	lung
40	chr4:57906400-57909800	Weak transcription	HMEC	breast
41	chr4:57906600-57908000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:57906600-57911600	Enhancers	Ovary	ovary
43	chr4:57906800-57910400	Strong transcription	NHEK	skin
44	chr4:57906800-57911600	Enhancers	Fetal Muscle Leg	muscle
45	chr4:57907000-57908000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:57907000-57908000	Strong transcription	Osteobl	bone
47	chr4:57907000-57908200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr4:57907000-57908600	Weak transcription	NH-A	brain
49	chr4:57907000-57909200	Weak transcription	Right Ventricle	heart
50	chr4:57907000-57910000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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