Variant report

Variant	rs4866947
Chromosome Location	chr5:42704630-42704631
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10038285	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10038477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041108	0.87[EUR][1000 genomes]
rs10041130	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10044169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050889	0.84[EUR][1000 genomes]
rs10061833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10077296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805665	0.98[EUR][1000 genomes]
rs10941583	0.86[EUR][1000 genomes]
rs10941588	0.82[EUR][1000 genomes]
rs1109882	0.83[EUR][1000 genomes]
rs12514437	0.83[EUR][1000 genomes]
rs12521311	0.80[EUR][1000 genomes]
rs12652476	0.82[ASN][1000 genomes]
rs12654861	0.82[ASN][1000 genomes]
rs13153760	0.80[EUR][1000 genomes]
rs13153784	0.80[EUR][1000 genomes]
rs13154178	0.80[EUR][1000 genomes]
rs1345824	0.88[AFR][1000 genomes]
rs1423655	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16872680	0.82[ASN][1000 genomes]
rs16872694	0.82[ASN][1000 genomes]
rs17839373	0.82[ASN][1000 genomes]
rs17839374	0.82[ASN][1000 genomes]
rs230808	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs230811	0.83[EUR][1000 genomes]
rs2910854	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910860	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910863	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910866	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910878	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910879	0.82[ASN][1000 genomes]
rs2972752	0.82[ASN][1000 genomes]
rs2972768	0.82[ASN][1000 genomes]
rs2972769	0.82[ASN][1000 genomes]
rs2972780	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972782	0.82[ASN][1000 genomes]
rs2973008	0.84[EUR][1000 genomes]
rs2973016	0.82[ASN][1000 genomes]
rs2973018	0.88[AFR][1000 genomes]
rs2973019	0.82[ASN][1000 genomes]
rs2973030	0.81[ASN][1000 genomes]
rs34159518	0.82[EUR][1000 genomes]
rs34382565	0.82[ASN][1000 genomes]
rs35291899	0.97[ASN][1000 genomes]
rs35604733	0.82[ASN][1000 genomes]
rs3877899	0.80[EUR][1000 genomes]
rs4146624	0.92[ASN][1000 genomes]
rs4242119	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242122	0.84[EUR][1000 genomes]
rs4242123	0.84[EUR][1000 genomes]
rs4242124	0.83[EUR][1000 genomes]
rs4273617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4315928	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4376276	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4547964	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4569879	0.82[EUR][1000 genomes]
rs4637559	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4866793	0.83[EUR][1000 genomes]
rs4866948	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866955	0.84[EUR][1000 genomes]
rs4866956	0.81[EUR][1000 genomes]
rs4866957	0.81[EUR][1000 genomes]
rs6179	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6182	0.82[ASN][1000 genomes]
rs6184	0.82[ASN][1000 genomes]
rs6414898	0.86[EUR][1000 genomes]
rs6451641	0.84[EUR][1000 genomes]
rs6451643	0.83[EUR][1000 genomes]
rs6871947	0.83[EUR][1000 genomes]
rs6873340	0.86[EUR][1000 genomes]
rs6897530	0.81[EUR][1000 genomes]
rs7442754	0.84[EUR][1000 genomes]
rs7444761	0.87[EUR][1000 genomes]
rs7447061	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7703289	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1031160	chr5:42610090-42843255	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019696	chr5:42610090-42844191	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv597886	chr5:42610409-42854408	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1029933	chr5:42611976-42833385	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv537735	chr5:42611976-42833385	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42688400-42722200	Weak transcription	Pancreas	Pancrea
2	chr5:42692200-42705600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:42692400-42705600	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:42698000-42718600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:42698800-42705600	Weak transcription	Aorta	Aorta
6	chr5:42698800-42718600	Weak transcription	Left Ventricle	heart
7	chr5:42701200-42718800	Weak transcription	Fetal Stomach	stomach
8	chr5:42701600-42718600	Weak transcription	Ovary	ovary
9	chr5:42702800-42706000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:42703000-42707000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr5:42703400-42707000	Strong transcription	Liver	Liver
12	chr5:42703800-42718600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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