Variant report

Variant	rs4867001
Chromosome Location	chr5:29169667-29169668
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
2	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
3	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
4	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
5	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
6	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
7	lnc-CDH6-2	chr5:29169667-29169720	XLOC_004325
8	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
9	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
10	lnc-CDH6-2	chr5:29169667-29169693	XLOC_004325
11	lnc-CDH6-2	chr5:29169667-29169693	ENSG00000259786.1
12	lnc-CDH6-2	chr5:29169666-29169720	NONHSAT100838
13	lnc-CDH6-2	chr5:29169667-29169693	ENSG00000259786.2
14	lnc-CDH6-2	chr5:29169667-29169693	NONHSAT100847
15	lnc-CDH6-2	chr5:29169667-29169693	NONHSAT100846

No data

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10940780	0.82[ASN][1000 genomes]
rs10940782	0.82[ASN][1000 genomes]
rs10940783	0.82[ASN][1000 genomes]
rs12518840	0.82[ASN][1000 genomes]
rs1390658	0.81[ASN][1000 genomes]
rs1390659	0.81[ASN][1000 genomes]
rs1390661	0.81[ASN][1000 genomes]
rs1478870	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160305	0.83[ASN][1000 genomes]
rs160306	0.85[ASN][1000 genomes]
rs1687612	0.81[ASN][1000 genomes]
rs1687613	0.81[ASN][1000 genomes]
rs1692342	0.81[ASN][1000 genomes]
rs1692345	0.81[ASN][1000 genomes]
rs1692348	0.81[ASN][1000 genomes]
rs2618418	0.81[ASN][1000 genomes]
rs2644937	0.83[ASN][1000 genomes]
rs2644949	0.81[ASN][1000 genomes]
rs2932806	0.83[ASN][1000 genomes]
rs474325	0.81[ASN][1000 genomes]
rs477865	0.81[ASN][1000 genomes]
rs480650	0.81[ASN][1000 genomes]
rs484786	0.83[ASN][1000 genomes]
rs4867002	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs489449	0.83[ASN][1000 genomes]
rs506533	0.83[ASN][1000 genomes]
rs506623	0.81[ASN][1000 genomes]
rs508549	0.83[ASN][1000 genomes]
rs509455	0.83[ASN][1000 genomes]
rs514676	0.81[ASN][1000 genomes]
rs515977	0.83[ASN][1000 genomes]
rs516107	0.81[ASN][1000 genomes]
rs516178	0.83[ASN][1000 genomes]
rs516480	0.81[ASN][1000 genomes]
rs519037	0.81[ASN][1000 genomes]
rs520652	0.83[ASN][1000 genomes]
rs520670	0.81[ASN][1000 genomes]
rs523336	0.83[ASN][1000 genomes]
rs533948	0.83[ASN][1000 genomes]
rs534864	0.83[ASN][1000 genomes]
rs535850	0.83[ASN][1000 genomes]
rs536846	0.83[ASN][1000 genomes]
rs537697	0.83[ASN][1000 genomes]
rs547299	0.81[ASN][1000 genomes]
rs557997	0.81[ASN][1000 genomes]
rs583745	0.83[ASN][1000 genomes]
rs593372	0.81[ASN][1000 genomes]
rs594211	0.81[ASN][1000 genomes]
rs594842	0.83[ASN][1000 genomes]
rs595097	0.81[ASN][1000 genomes]
rs596766	0.83[ASN][1000 genomes]
rs597694	0.83[ASN][1000 genomes]
rs602489	0.81[ASN][1000 genomes]
rs603756	0.81[ASN][1000 genomes]
rs607286	0.81[ASN][1000 genomes]
rs610094	0.83[ASN][1000 genomes]
rs617084	0.81[ASN][1000 genomes]
rs644330	0.83[ASN][1000 genomes]
rs656260	0.83[ASN][1000 genomes]
rs658439	0.83[ASN][1000 genomes]
rs824326	0.85[ASN][1000 genomes]
rs824327	0.85[ASN][1000 genomes]
rs824329	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1022253	chr5:29076460-29195987	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv964827	chr5:29138557-29198352	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29169400-29170000	Enhancers	Fetal Brain Male	brain
2	chr5:29169400-29170400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links