Variant report

Variant	rs4869244
Chromosome Location	chr5:94963603-94963604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10075777	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7731790	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94957800-94967200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94958200-94964600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:94958200-94967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:94959800-94967800	Weak transcription	Pancreas	Pancrea
5	chr5:94960000-94967000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:94960200-94966000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:94960600-94966200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:94961000-94966400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:94961000-94966600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:94961200-94966200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:94961400-94967400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:94963400-94964800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr5:94963400-94965600	Enhancers	Fetal Intestine Small	intestine
14	chr5:94963400-94966400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:94963400-94967200	Enhancers	Fetal Intestine Large	intestine
16	chr5:94963600-94964400	Enhancers	Colonic Mucosa	Colon
17	chr5:94963600-94964800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr5:94963600-94964800	Enhancers	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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