Variant report

Variant	rs4869660
Chromosome Location	chr5:36424281-36424282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12109874	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12522034	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13153914	0.85[ASN][1000 genomes]
rs4242263	0.96[ASN][1000 genomes]
rs4469212	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4571496	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4628020	0.87[ASN][1000 genomes]
rs4869661	0.81[EUR][1000 genomes]
rs4869662	0.81[EUR][1000 genomes]
rs4869663	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6451286	0.96[ASN][1000 genomes]
rs6869186	0.95[ASN][1000 genomes]
rs6883825	0.99[ASN][1000 genomes]
rs7735940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36419800-36430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:36422200-36424400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:36422400-36424600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:36422600-36424400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:36422600-36424400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:36422800-36432000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:36423000-36424400	Enhancers	Primary T cells from cord blood	blood
8	chr5:36423000-36424600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:36423200-36424400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:36423400-36424600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:36423800-36424400	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:36423800-36425400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:36423800-36425600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:36424000-36425400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:36424000-36425800	Enhancers	Hela-S3	cervix
16	chr5:36424200-36425400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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