Variant report

Variant	rs4870163
Chromosome Location	chr6:150289707-150289708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1748296	0.84[AMR][1000 genomes]
rs1853665	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs1951931	0.97[ASN][1000 genomes]
rs35409210	0.90[ASN][1000 genomes]
rs4869779	0.95[ASN][1000 genomes]
rs4869780	0.89[ASN][1000 genomes]
rs4869782	0.88[CEU][hapmap]
rs4870170	0.95[ASN][1000 genomes]
rs4870171	0.95[ASN][1000 genomes]
rs6557221	0.95[ASN][1000 genomes]
rs6557223	0.95[ASN][1000 genomes]
rs6557225	0.95[ASN][1000 genomes]
rs9383621	0.83[ASN][1000 genomes]
rs9383993	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9397087	0.81[CHD][hapmap]
rs9478331	0.95[ASN][1000 genomes]
rs9479308	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970175	chr6:150286661-150300237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150286800-150294800	Weak transcription	HSMMtube	muscle
2	chr6:150287000-150290600	Weak transcription	Spleen	Spleen
3	chr6:150288600-150295600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:150289400-150290400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:150289600-150290200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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