Variant report

Variant	rs4870753
Chromosome Location	chr8:121839775-121839776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121839539..121841750-chr8:121853212..121856019,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4409434	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4623472	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4642694	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4871133	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4871134	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6994318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6994902	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7013980	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014184	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014654	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73707183	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73707184	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121835600-121840200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:121835800-121839800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:121835800-121840200	Enhancers	HepG2	liver
4	chr8:121835800-121840400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:121835800-121840400	Enhancers	NHDF-Ad	bronchial
6	chr8:121836000-121840200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:121836200-121840600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:121837200-121840200	Enhancers	Osteobl	bone
9	chr8:121837400-121840400	Enhancers	NHLF	lung
10	chr8:121837600-121843800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:121837800-121840000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:121838000-121840000	Enhancers	Liver	Liver
13	chr8:121838200-121840600	Enhancers	Fetal Intestine Small	intestine
14	chr8:121838200-121841200	Enhancers	Fetal Intestine Large	intestine
15	chr8:121838400-121869800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:121839000-121840600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:121839200-121839800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:121839200-121840400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:121839400-121842000	Weak transcription	Psoas Muscle	Psoas
20	chr8:121839600-121840600	Enhancers	Hela-S3	cervix
21	chr8:121839600-121840800	Enhancers	Primary monocytes fromperipheralblood	blood

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