Variant report

Variant	rs4870865
Chromosome Location	chr8:124758189-124758190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10096651	0.83[EUR][1000 genomes]
rs17352760	1.00[CHB][hapmap]
rs1978680	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124746800-124763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:124749800-124758200	Enhancers	Fetal Intestine Large	intestine
3	chr8:124749800-124758400	Enhancers	Fetal Intestine Small	intestine
4	chr8:124756400-124761400	Weak transcription	NHEK	skin
5	chr8:124757200-124758200	Enhancers	HepG2	liver
6	chr8:124757400-124761600	Weak transcription	A549	lung
7	chr8:124757800-124761200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:124757800-124764600	Weak transcription	Small Intestine	intestine
9	chr8:124758000-124759400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:124758000-124759600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:124758000-124760000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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