Variant report

Variant	rs4870866
Chromosome Location	chr8:124761727-124761728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10429369	0.83[AFR][1000 genomes]
rs12546891	0.84[YRI][hapmap]
rs12550235	0.86[CHB][hapmap];0.91[GIH][hapmap]
rs13252451	0.89[CEU][hapmap]
rs13253599	0.85[YRI][hapmap]
rs13275308	0.86[CHB][hapmap];0.91[GIH][hapmap];0.81[YRI][hapmap]
rs13278192	0.84[AFR][1000 genomes]
rs16898871	0.88[GIH][hapmap];0.85[YRI][hapmap]
rs2060112	0.88[GIH][hapmap];0.83[MEX][hapmap]
rs34253744	0.86[AFR][1000 genomes]
rs34354351	0.86[AFR][1000 genomes]
rs34850344	0.84[AFR][1000 genomes]
rs4871415	0.84[GIH][hapmap]
rs6470186	0.84[GIH][hapmap]
rs6986269	0.86[CHB][hapmap]
rs6988602	0.88[GIH][hapmap]
rs7004482	0.86[CHB][hapmap]
rs7014688	0.91[GIH][hapmap];0.83[LWK][hapmap];0.92[YRI][hapmap]
rs7017174	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124746800-124763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:124757800-124764600	Weak transcription	Small Intestine	intestine
3	chr8:124759200-124763200	Enhancers	Fetal Intestine Large	intestine
4	chr8:124759400-124761800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:124759600-124764200	Enhancers	Fetal Intestine Small	intestine
6	chr8:124760200-124761800	Weak transcription	HepG2	liver
7	chr8:124760400-124766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:124760800-124763400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:124761200-124761800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:124761200-124762000	Enhancers	Fetal Kidney	kidney
11	chr8:124761200-124762400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:124761200-124762800	Enhancers	Duodenum Mucosa	Duodenum
13	chr8:124761400-124761800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:124761400-124762600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:124761400-124762600	Enhancers	NHEK	skin
16	chr8:124761600-124762000	Enhancers	A549	lung
17	chr8:124761600-124762400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:124761600-124762600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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