Variant report

Variant	rs4870897
Chromosome Location	chr8:120216336-120216337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120203920..120207370-chr8:120214031..120217579,4	MCF-7	breast:
2	chr8:120211698..120216543-chr8:120218864..120221677,6	MCF-7	breast:
3	chr8:120114312..120117094-chr8:120216104..120219315,3	MCF-7	breast:
4	chr8:120210122..120216646-chr8:120218897..120222949,8	MCF-7	breast:
5	chr8:120210402..120213161-chr8:120216090..120218568,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147676	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10096921	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10113336	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13252588	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364706	0.83[CHB][hapmap]
rs1364708	0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1425052	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1425053	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1485292	0.82[JPT][hapmap]
rs1541726	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549415	0.82[CHB][hapmap]
rs17182246	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2326222	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2450060	0.88[JPT][hapmap]
rs2450063	0.82[JPT][hapmap]
rs2450073	0.82[JPT][hapmap]
rs2450079	0.82[JPT][hapmap]
rs2465370	0.82[CHB][hapmap]
rs2465373	0.88[ASN][1000 genomes]
rs2465377	0.88[ASN][1000 genomes]
rs2465379	0.88[ASN][1000 genomes]
rs2468173	0.83[ASN][1000 genomes]
rs2468184	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2468186	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4871362	0.83[CHB][hapmap]
rs6994957	0.83[CHB][hapmap]
rs7000127	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7386676	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7825089	0.83[CHB][hapmap]
rs9656931	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120212800-120218600	Weak transcription	Esophagus	oesophagus
2	chr8:120215200-120217200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:120215200-120217600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:120215200-120219400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:120215200-120220000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:120215400-120217000	Enhancers	NHEK	skin
7	chr8:120215400-120219600	Enhancers	HMEC	breast
8	chr8:120215400-120219800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:120215600-120216400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:120215600-120216400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:120215600-120217600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr8:120215600-120219400	Enhancers	Stomach Mucosa	stomach
13	chr8:120215800-120216400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:120215800-120216400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:120215800-120217200	Enhancers	Adipose Nuclei	Adipose
16	chr8:120216000-120216600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr8:120216000-120216800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:120216000-120217600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:120216200-120219400	Enhancers	Hela-S3	cervix
20	chr8:120216200-120220000	Weak transcription	Liver	Liver

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