Variant report

Variant	rs4871352
Chromosome Location	chr8:120567358-120567359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120564971..120567945-chr8:120569047..120570627,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12114728	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13252721	0.93[ASN][1000 genomes]
rs2028849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305126	0.87[YRI][hapmap]
rs28782203	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4268151	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4272411	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6982484	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002854	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7008680	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714607	0.90[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs745383	0.87[YRI][hapmap]
rs976423	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4871352	ARID3B	trans	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120559200-120568000	Weak transcription	Brain Hippocampus Middle	brain
2	chr8:120562800-120575000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:120565000-120595200	Weak transcription	Fetal Stomach	stomach
4	chr8:120565400-120570400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:120565600-120567800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:120565800-120568800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:120565800-120576000	Weak transcription	Left Ventricle	heart
8	chr8:120566000-120577400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:120566000-120577800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:120566000-120596800	Weak transcription	Spleen	Spleen
11	chr8:120566000-120609200	Weak transcription	Aorta	Aorta
12	chr8:120566200-120577000	Weak transcription	NHLF	lung
13	chr8:120566200-120577200	Weak transcription	Brain Angular Gyrus	brain
14	chr8:120566200-120578400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:120566400-120567600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr8:120566400-120569800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:120566400-120571000	Weak transcription	Osteobl	bone
18	chr8:120566400-120571200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:120566400-120579000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:120566600-120567600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:120566600-120567600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr8:120566600-120567800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:120566600-120568000	Weak transcription	Liver	Liver
24	chr8:120566600-120570800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:120567000-120568200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:120567000-120568600	Strong transcription	Fetal Lung	lung
27	chr8:120567000-120569800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:120567000-120569800	Strong transcription	Adipose Nuclei	Adipose
29	chr8:120567000-120577800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:120567000-120580200	Strong transcription	Placenta	Placenta
31	chr8:120567200-120568200	Strong transcription	Brain Substantia Nigra	brain
32	chr8:120567200-120568200	Genic enhancers	NHDF-Ad	bronchial
33	chr8:120567200-120568800	Weak transcription	Brain Anterior Caudate	brain
34	chr8:120567200-120569800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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