Variant report

Variant	rs4871406
Chromosome Location	chr8:124670101-124670102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124661695..124666565-chr8:124667806..124672490,5	MCF-7	breast:
2	chr8:124668534..124670111-chr8:124695984..124698883,2	K562	blood:
3	chr8:124662032..124665488-chr8:124668654..124670370,3	MCF-7	breast:
4	chr8:124668666..124670546-chr8:124672499..124675168,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175946	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11997295	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13340553	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898671	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs28377815	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34123325	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34218333	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3891281	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4242343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4242344	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4449770	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4618676	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870863	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4871404	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4871407	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55714811	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56123029	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6982035	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7004851	0.80[CEU][hapmap]
rs7461069	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840274	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1841904	chr8:124664130-124676037	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3324945	chr8:124669371-124673969	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4871406	TRIB1	cis	parietal	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124666200-124674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:124666400-124671200	Enhancers	Fetal Muscle Leg	muscle
3	chr8:124666800-124678600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:124667000-124670200	Weak transcription	Brain Anterior Caudate	brain
5	chr8:124667400-124671400	Enhancers	Colon Smooth Muscle	Colon
6	chr8:124667600-124670200	Weak transcription	Brain Angular Gyrus	brain
7	chr8:124667600-124670200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:124667600-124670200	Weak transcription	Fetal Brain Male	brain
9	chr8:124667600-124670800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:124667800-124670200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:124668200-124671000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:124668200-124671200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:124668200-124673200	Weak transcription	Esophagus	oesophagus
14	chr8:124668200-124673600	Weak transcription	Pancreas	Pancrea
15	chr8:124668400-124680800	Weak transcription	Fetal Heart	heart
16	chr8:124669400-124670200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:124669400-124671000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:124669400-124671200	Enhancers	Fetal Stomach	stomach
19	chr8:124669400-124671400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:124669400-124671600	Enhancers	Osteobl	bone
21	chr8:124669600-124670400	Enhancers	Aorta	Aorta
22	chr8:124669600-124670400	Enhancers	Right Atrium	heart
23	chr8:124669600-124671000	Enhancers	Fetal Intestine Large	intestine
24	chr8:124669600-124671200	Enhancers	Fetal Intestine Small	intestine
25	chr8:124669600-124671200	Enhancers	NH-A	brain
26	chr8:124669800-124670200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:124669800-124670200	Enhancers	Colonic Mucosa	Colon
28	chr8:124669800-124670200	Enhancers	Lung	lung
29	chr8:124669800-124670400	Enhancers	Fetal Muscle Trunk	muscle
30	chr8:124669800-124670400	Enhancers	Left Ventricle	heart
31	chr8:124669800-124670600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:124669800-124670600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:124669800-124670600	Enhancers	Placenta	Placenta
34	chr8:124669800-124670600	Flanking Active TSS	HepG2	liver
35	chr8:124669800-124671200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:124669800-124671400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:124669800-124671400	Enhancers	Fetal Kidney	kidney
38	chr8:124669800-124671600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:124669800-124671800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr8:124669800-124673400	Weak transcription	HMEC	breast
41	chr8:124670000-124670200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr8:124670000-124670200	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr8:124670000-124670400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:124670000-124670400	Enhancers	Duodenum Mucosa	Duodenum
45	chr8:124670000-124670400	Enhancers	Ovary	ovary
46	chr8:124670000-124670400	Enhancers	HSMMtube	muscle
47	chr8:124670000-124670800	Enhancers	Brain Germinal Matrix	brain
48	chr8:124670000-124670800	Enhancers	Small Intestine	intestine
49	chr8:124670000-124671000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr8:124670000-124671000	Enhancers	Brain Inferior Temporal Lobe	brain

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