Variant report

Variant	rs4871590
Chromosome Location	chr8:126388073-126388074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10094181	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10100121	0.81[EUR][1000 genomes]
rs10100566	0.81[EUR][1000 genomes]
rs10104659	0.80[EUR][1000 genomes]
rs10106359	0.81[EUR][1000 genomes]
rs10216374	0.81[EUR][1000 genomes]
rs10216768	0.81[EUR][1000 genomes]
rs10505453	0.81[EUR][1000 genomes]
rs10956241	0.80[EUR][1000 genomes]
rs10956242	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11774053	0.81[EUR][1000 genomes]
rs11775165	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11776254	0.84[EUR][1000 genomes]
rs11777625	0.81[EUR][1000 genomes]
rs11997581	0.81[EUR][1000 genomes]
rs12680560	0.81[EUR][1000 genomes]
rs13254815	0.85[EUR][1000 genomes]
rs13255114	0.85[EUR][1000 genomes]
rs2293890	0.84[EUR][1000 genomes]
rs2385100	0.86[EUR][1000 genomes]
rs2891678	0.84[EUR][1000 genomes]
rs4870936	0.81[EUR][1000 genomes]
rs4871582	0.81[EUR][1000 genomes]
rs6989275	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6989383	0.81[EUR][1000 genomes]
rs6990622	0.81[EUR][1000 genomes]
rs7815471	0.81[EUR][1000 genomes]
rs7822592	0.84[EUR][1000 genomes]
rs9297716	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126375400-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:126382000-126391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:126382200-126394200	Weak transcription	Thymus	Thymus
4	chr8:126382400-126388600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:126382400-126388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:126382400-126396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:126384000-126391000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:126384200-126396000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:126384200-126400200	Weak transcription	NHLF	lung
10	chr8:126384600-126388600	Weak transcription	HepG2	liver
11	chr8:126384600-126391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:126384600-126391200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:126384800-126391000	Weak transcription	Hela-S3	cervix
14	chr8:126386400-126388800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:126386600-126391000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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