Variant report

Variant	rs4873173
Chromosome Location	chr8:52019990-52019991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10094558	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100485	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11775484	0.86[ASN][1000 genomes]
rs12114420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114841	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541840	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12544225	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549225	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549244	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12676893	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735096	0.89[ASN][1000 genomes]
rs1869756	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1869757	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2045249	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2045250	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28391242	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28499187	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28535699	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28575512	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28612111	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28625320	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4266664	0.84[ASN][1000 genomes]
rs4873172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873179	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873180	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873182	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62506784	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62506785	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62506786	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6473576	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66887332	0.93[ASN][1000 genomes]
rs7014100	0.98[ASN][1000 genomes]
rs72651922	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72651924	0.96[ASN][1000 genomes]
rs7824553	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7825572	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827814	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828840	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7832466	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7840774	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841651	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7844265	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845086	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs897449	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs967610	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9792214	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1031155	chr8:51907530-52173218	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv890893	chr8:51954441-52020709	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1031057	chr8:51954841-52024891	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv890894	chr8:51981777-52027473	ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52019600-52020000	Active TSS	Hela-S3	cervix

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