Variant report

Variant	rs4873196
Chromosome Location	chr8:52414955-52414956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52414580..52417388-chr8:52418720..52420660,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10504121	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10755971	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11774543	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11785786	0.80[ASN][1000 genomes]
rs12541541	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12544806	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12675815	0.88[EUR][1000 genomes]
rs13254318	0.88[EUR][1000 genomes]
rs13263053	0.86[EUR][1000 genomes]
rs13271514	0.86[ASN][1000 genomes]
rs13273278	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13277264	0.82[ASN][1000 genomes]
rs1367819	0.83[EUR][1000 genomes]
rs1431632	0.80[ASN][1000 genomes]
rs1814121	0.86[EUR][1000 genomes]
rs1835689	0.86[EUR][1000 genomes]
rs2013700	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2195762	0.86[ASN][1000 genomes]
rs2217525	0.87[ASN][1000 genomes]
rs2915499	0.83[ASN][1000 genomes]
rs2915500	0.85[ASN][1000 genomes]
rs2979122	0.85[ASN][1000 genomes]
rs35631122	0.80[ASN][1000 genomes]
rs4299996	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4503089	0.88[EUR][1000 genomes]
rs4873557	0.82[ASN][1000 genomes]
rs6473609	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs755311	0.88[ASN][1000 genomes]
rs7812416	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9298448	0.85[ASN][1000 genomes]
rs9298450	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv3329496	chr8:52411999-52416197	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52413600-52415000	Enhancers	Left Ventricle	heart
2	chr8:52413800-52415000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:52413800-52415000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:52413800-52415000	Enhancers	Right Ventricle	heart
5	chr8:52414000-52415000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:52414200-52415000	Enhancers	Psoas Muscle	Psoas
7	chr8:52414400-52415000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:52414600-52415200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:52414800-52415400	Enhancers	NH-A	brain

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