Variant report

Variant	rs487580
Chromosome Location	chr6:75320266-75320267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs528961	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75315800-75320600	Enhancers	HUVEC	blood vessel
2	chr6:75316600-75320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75316600-75320800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:75316600-75322200	Enhancers	Osteobl	bone
5	chr6:75317000-75321400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:75317000-75322200	Enhancers	Hela-S3	cervix
7	chr6:75317200-75322200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:75318800-75320600	Enhancers	NHLF	lung
9	chr6:75318800-75320800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:75318800-75321200	Enhancers	NHDF-Ad	bronchial
11	chr6:75319000-75320600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:75319000-75320600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:75319000-75320600	Enhancers	HSMM	muscle
14	chr6:75319000-75321600	Enhancers	A549	lung
15	chr6:75319200-75320600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:75319400-75320600	Enhancers	HMEC	breast
17	chr6:75319800-75320400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:75320000-75320600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:75320200-75320600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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