Variant report

Variant	rs4875925
Chromosome Location	chr8:2004704-2004705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13265964	0.96[ASN][1000 genomes]
rs1542063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542065	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34757246	0.96[ASN][1000 genomes]
rs3779861	0.88[ASN][1000 genomes]
rs4875923	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4875924	0.96[ASN][1000 genomes]
rs4875926	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876236	0.81[ASN][1000 genomes]
rs6558591	0.92[ASN][1000 genomes]
rs7461903	0.96[ASN][1000 genomes]
rs7463722	0.81[ASN][1000 genomes]
rs7833402	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833424	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:1999000-2005400	Weak transcription	Right Atrium	heart
3	chr8:2001000-2006600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
4	chr8:2002400-2010400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:2002600-2007000	Weak transcription	Psoas Muscle	Psoas
6	chr8:2003200-2007400	Genic enhancers	Fetal Muscle Leg	muscle
7	chr8:2003400-2006000	Genic enhancers	Left Ventricle	heart
8	chr8:2004200-2005400	Weak transcription	Right Ventricle	heart
9	chr8:2004400-2005400	Weak transcription	Fetal Heart	heart
10	chr8:2004600-2005400	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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