Variant report

Variant	rs4876260
Chromosome Location	chr8:1923414-1923415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:1921236-1923740	H1-neurons	neurons:	n/a	n/a
2	REST	chr8:1921745-1924695	H1-neurons	neurons:	n/a	chr8:1922723-1922743 chr8:1921892-1921905 chr8:1921938-1921951 chr8:1922973-1922986 chr8:1922714-1922724 chr8:1923948-1923956
3	POLR2A	chr8:1922190-1924413	SK-N-MC	brain:	n/a	n/a
4	REST	chr8:1922876-1923617	H1-neurons	neurons:	n/a	chr8:1922973-1922986
5	POLR2A	chr8:1921696-1923754	H1-neurons	neurons:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGEF10-1	chr8:1922984-1923480	ENSG00000270988.1

Variant related genes	Relation type
ENSG00000253764	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4876261	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62478193	0.91[ASN][1000 genomes]
rs7388076	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889704	chr8:1563904-1965389	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv889708	chr8:1581839-1965389	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv889709	chr8:1581839-1965389	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv889714	chr8:1616718-1965389	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv609531	chr8:1717036-1965389	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv889717	chr8:1746950-1924237	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv889724	chr8:1756800-1965389	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv889729	chr8:1800560-1947417	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv889731	chr8:1868842-1965389	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv889736	chr8:1892069-1965389	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv889738	chr8:1897249-1965389	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv824473	chr8:1914305-1965389	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv824474	chr8:1915145-1960212	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv824477	chr8:1915145-1965389	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv889740	chr8:1916347-1954464	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv889741	chr8:1916347-1955283	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv889742	chr8:1918352-1955142	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1015930	chr8:1919596-1952936	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv1839364	chr8:1920461-1951163	Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv3489278	chr8:1921020-1923843	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	esv3489279	chr8:1921020-1923843	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv3326517	chr8:1921070-1924118	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	esv3389371	chr8:1921945-1923593	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1921000-1923600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr8:1922200-1926400	Weak transcription	Dnd41	blood
3	chr8:1922600-1924200	Flanking Active TSS	Brain Hippocampus Middle	brain
4	chr8:1922600-1928600	Weak transcription	Spleen	Spleen
5	chr8:1922800-1923600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:1922800-1923600	Weak transcription	Gastric	stomach
7	chr8:1922800-1923800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:1922800-1923800	Active TSS	Colonic Mucosa	Colon
9	chr8:1922800-1924000	Enhancers	Liver	Liver
10	chr8:1922800-1924200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:1922800-1928800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:1923000-1923600	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr8:1923000-1923600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
14	chr8:1923000-1923800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:1923000-1923800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr8:1923000-1923800	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr8:1923000-1923800	Enhancers	Stomach Mucosa	stomach
18	chr8:1923000-1923800	Weak transcription	HSMMtube	muscle
19	chr8:1923000-1924000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr8:1923000-1924200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:1923000-1924200	Flanking Active TSS	Fetal Intestine Small	intestine
22	chr8:1923000-1924400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr8:1923000-1924400	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr8:1923000-1924400	Enhancers	Fetal Lung	lung
25	chr8:1923000-1924600	Flanking Active TSS	Fetal Brain Female	brain
26	chr8:1923000-1924800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:1923000-1925000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:1923200-1923600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr8:1923200-1923600	Flanking Active TSS	Fetal Heart	heart
30	chr8:1923200-1923600	Flanking Active TSS	Fetal Kidney	kidney
31	chr8:1923200-1923800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:1923200-1923800	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr8:1923200-1924000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:1923200-1924200	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr8:1923200-1924400	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr8:1923200-1924400	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr8:1923200-1924400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr8:1923200-1924400	Enhancers	Fetal Stomach	stomach
39	chr8:1923200-1924400	Enhancers	Fetal Thymus	thymus
40	chr8:1923200-1924400	Enhancers	Thymus	Thymus
41	chr8:1923200-1924400	Bivalent Enhancer	NHDF-Ad	bronchial
42	chr8:1923200-1924600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:1923200-1924800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr8:1923200-1928800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:1923400-1923600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:1923400-1923600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr8:1923400-1923600	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr8:1923400-1923600	Weak transcription	Right Atrium	heart
49	chr8:1923400-1923800	Enhancers	Fetal Brain Male	brain
50	chr8:1923400-1923800	Enhancers	Left Ventricle	heart

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