Variant report

Variant	rs4880191
Chromosome Location	chr9:139923937-139923938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:139923845-139924123	Kidney_OC	kidney:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
2	RAD21	chr9:139923769-139924163	IMR90	lung:	n/a	chr9:139923985-139923999 chr9:139923977-139923990 chr9:139923984-139924003
3	CTCF	chr9:139923920-139924070	HRE	kidney:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
4	CTCF	chr9:139922715-139924542	HCT-116	colon:	n/a	chr9:139923748-139923756 chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923391-139923399 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
5	CTCF	chr9:139923900-139924050	GM12864	blood:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
6	ZNF143	chr9:139922635-139924180	GM12878	blood:	n/a	chr9:139923668-139923686 chr9:139923401-139923419
7	POLR2A	chr9:139923531-139924090	MCF-7	breast:	n/a	n/a
8	CTCF	chr9:139923920-139924070	HMEC	breast:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
9	MAX	chr9:139922278-139924201	NB4	blood:	n/a	n/a
10	UBTF	chr9:139923804-139924004	K562	blood:	n/a	n/a
11	CTCF	chr9:139923920-139924070	SAEC	small airway:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
12	BHLHE40	chr9:139923867-139924110	K562	blood:	n/a	n/a
13	CTCF	chr9:139923900-139924050	K562	blood:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
14	MAX	chr9:139923823-139924128	Hela-S3	cervix:	n/a	n/a
15	CTCF	chr9:139923819-139924134	MCF-7	breast:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
16	MAZ	chr9:139923828-139924137	K562	blood:	n/a	n/a
17	CTCF	chr9:139923900-139924050	GM12871	blood:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
18	PAX5	chr9:139923852-139924088	GM12878	blood:	n/a	n/a
19	CTCF	chr9:139923837-139924135	GM13977	blood:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
20	CTCF	chr9:139923900-139924050	NHEK	skin:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
21	CTCF	chr9:139923830-139924147	Medullo	brain:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
22	CTCF	chr9:139922928-139924372	HCT-116	colon:	n/a	chr9:139923748-139923756 chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923391-139923399 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
23	CTCF	chr9:139923880-139924168	A549	lung:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
24	CTCF	chr9:139923900-139924050	WI-38	lung:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
25	CTCF	chr9:139923900-139924050	GM12875	blood:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
26	CTCF	chr9:139923775-139924120	A549	lung:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
27	CTCF	chr9:139923900-139924050	AoAF	blood vessel:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
28	RCOR1	chr9:139923814-139924162	K562	blood:	n/a	n/a
29	RAD21	chr9:139923810-139924163	H1-hESC	embryonic stem cell:	n/a	chr9:139923985-139923999 chr9:139923977-139923990 chr9:139923984-139924003
30	MAZ	chr9:139923846-139924129	GM12878	blood:	n/a	n/a
31	CTCF	chr9:139923277-139924223	GM19239	blood:	n/a	chr9:139923748-139923756 chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923391-139923399 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
32	CTCF	chr9:139923725-139924252	MCF-7	breast:	n/a	chr9:139923748-139923756 chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
33	CTCF	chr9:139923256-139924186	Spleen_OC	spleen:	n/a	chr9:139923748-139923756 chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923391-139923399 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
34	RCOR1	chr9:139923869-139924149	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr9:139923814-139924062	HUVEC	blood vessel:	n/a	n/a
36	STAT5A	chr9:139923796-139924143	GM12878	blood:	n/a	chr9:139923905-139923917
37	CTCF	chr9:139923856-139924105	SK-N-SH_RA	brain:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
38	CTCF	chr9:139923880-139924030	HAc	cerebellar:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139923984-139924000
39	CTCF	chr9:139923900-139924050	HEK293	kidney:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
40	BHLHE40	chr9:139923824-139924077	GM12878	blood:	n/a	n/a
41	RAD21	chr9:139923826-139924165	HepG2	liver:	n/a	chr9:139923985-139923999 chr9:139923977-139923990 chr9:139923984-139924003
42	GTF2F1	chr9:139923294-139924103	Hela-S3	cervix:	n/a	n/a
43	ARID3A	chr9:139923914-139924119	HepG2	liver:	n/a	n/a
44	MAX	chr9:139921721-139924181	MCF-7	breast:	n/a	chr9:139922260-139922270 chr9:139922225-139922235
45	CTCF	chr9:139923817-139924138	LNCaP	prostate:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
46	CTCF	chr9:139923900-139924050	HRE	kidney:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
47	CTCF	chr9:139923273-139924138	K562	blood:	n/a	chr9:139923748-139923756 chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923391-139923399 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
48	CTCF	chr9:139923920-139924070	GM12878	blood:	n/a	chr9:139923986-139923999 chr9:139923985-139924006 chr9:139923983-139924001 chr9:139923986-139923995 chr9:139924036-139924049 chr9:139923984-139924000
49	POLR2A	chr9:139922719-139927900	HL-60	blood:	n/a	n/a
50	MYC	chr9:139923925-139924061	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139923454..139924056-chr9:139958612..139959475,2	K562	blood:
2	chr9:139918301..139927249-chr9:139936258..139942370,21	MCF-7	breast:
3	chr9:139922165..139925014-chr9:140170357..140173270,2	K562	blood:
4	chr9:139742018..139745799-chr9:139919538..139925328,8	MCF-7	breast:
5	chr9:139902580..139904813-chr9:139923616..139926174,2	K562	blood:
6	chr9:139836491..139840843-chr9:139920877..139924515,5	K562	blood:
7	chr9:139922847..139924355-chr9:140062589..140064424,2	MCF-7	breast:
8	chr9:139685184..139687112-chr9:139923073..139925089,2	K562	blood:
9	chr9:139920279..139925059-chr9:139978182..139982194,5	MCF-7	breast:
10	chr9:139922209..139924841-chr9:140120636..140123534,2	MCF-7	breast:
11	chr9:139836105..139846821-chr9:139919094..139924819,24	MCF-7	breast:
12	chr9:139683536..139687591-chr9:139921894..139924460,4	MCF-7	breast:
13	chr9:139922911..139929115-chr9:139930857..139935016,8	K562	blood:
14	chr9:139922316..139924149-chr9:140135106..140137237,2	MCF-7	breast:
15	chr9:139873674..139875664-chr9:139922042..139924994,2	K562	blood:
16	chr9:139886404..139888312-chr9:139922144..139924754,3	K562	blood:
17	chr9:139742204..139744989-chr9:139922690..139924315,2	K562	blood:
18	chr9:139873674..139878101-chr9:139922042..139924595,3	K562	blood:
19	chr9:139842181..139843086-chr9:139923397..139924093,3	MCF-7	breast:
20	chr9:139843458..139844222-chr9:139923528..139924061,2	K562	blood:
21	chr9:139886404..139888065-chr9:139922144..139924754,2	K562	blood:
22	chr9:139921526..139924056-chr9:139944120..139947327,3	K562	blood:
23	chr9:139839169..139839822-chr9:139923374..139924123,3	MCF-7	breast:
24	chr9:139885641..139893253-chr9:139914079..139925631,41	MCF-7	breast:
25	chr9:139620118..139623932-chr9:139922375..139925511,3	MCF-7	breast:
26	chr9:139923536..139924249-chr9:139940718..139941284,2	MCF-7	breast:
27	chr9:139884297..139893800-chr9:139910309..139932457,68	MCF-7	breast:
28	chr9:139694358..139696038-chr9:139921921..139924153,3	MCF-7	breast:
29	chr9:139740616..139744257-chr9:139921749..139926263,5	MCF-7	breast:
30	chr9:139622315..139624306-chr9:139923382..139925602,2	K562	blood:

Variant related genes	Relation type
ABCA2	TF binding region
ENSG00000233198	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000214402	Chromatin interaction
ENSG00000198113	Chromatin interaction
ENSG00000107317	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000263697	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000235117	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10732706	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10781534	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1138628	0.83[CHD][hapmap]
rs13301354	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2176675	0.90[CHD][hapmap]
rs4880190	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880192	0.93[CHD][hapmap];0.86[GIH][hapmap]
rs4880193	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6604	0.83[CHD][hapmap];0.94[JPT][hapmap]
rs7038280	0.86[CHD][hapmap];0.84[GIH][hapmap]
rs7047770	0.92[ASW][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7469569	1.00[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9411293	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
13	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
14	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
16	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
17	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
18	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
19	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
21	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
22	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
23	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
24	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
25	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
26	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
27	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
28	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
29	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
30	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
31	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
32	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
33	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
34	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
35	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
36	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
37	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
38	nsv894514	chr9:139860631-139943112	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	79 gene(s)	inside rSNPs	diseases
39	nsv894515	chr9:139860631-139963091	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
40	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
41	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
42	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
43	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
44	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
45	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
46	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
47	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
48	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
49	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
50	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4880191	MAN1B1	cis	Whole Blood	GTEx
rs4880191	BARHL1	cis	cerebellum	SCAN
rs4880191	MAN1B1	cis	cerebellum	SCAN
rs4880191	FBXW5	cis	parietal	SCAN
rs4880191	AGPAT2	cis	parietal	SCAN
rs4880191	LCNL1	cis	parietal	SCAN

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139921800-139924000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr9:139922800-139924000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:139922800-139924000	Enhancers	Fetal Brain Male	brain
4	chr9:139922800-139924000	Flanking Active TSS	Dnd41	blood
5	chr9:139922800-139924800	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr9:139922800-139925800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:139922800-139928600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr9:139923000-139924000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:139923000-139924000	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr9:139923000-139924000	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr9:139923000-139924000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:139923000-139924000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:139923000-139924000	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr9:139923000-139924000	Flanking Active TSS	Liver	Liver
15	chr9:139923000-139924000	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr9:139923000-139924000	Flanking Active TSS	Colonic Mucosa	Colon
17	chr9:139923000-139924000	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr9:139923000-139924000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr9:139923000-139924000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr9:139923000-139924000	Flanking Active TSS	Right Ventricle	heart
21	chr9:139923000-139924000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr9:139923000-139924000	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr9:139923000-139924000	Flanking Active TSS	Hela-S3	cervix
24	chr9:139923000-139924200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:139923000-139924200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr9:139923000-139924400	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr9:139923000-139925200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:139923000-139926200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:139923000-139926400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:139923000-139927000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr9:139923000-139927600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr9:139923000-139927800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:139923000-139928600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr9:139923000-139928600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr9:139923000-139930000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr9:139923000-139930000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr9:139923000-139930000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:139923200-139924000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr9:139923200-139924000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:139923200-139924000	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr9:139923200-139924000	Enhancers	Fetal Heart	heart
42	chr9:139923200-139924000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr9:139923200-139924200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr9:139923200-139924200	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr9:139923200-139924200	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr9:139923200-139924200	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr9:139923200-139924400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr9:139923200-139926800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr9:139923400-139924000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
50	chr9:139923400-139924000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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