Variant report

Variant	rs4880664
Chromosome Location	chr10:4135575-4135576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10736986	0.83[ASN][1000 genomes]
rs10751958	0.85[ASN][1000 genomes]
rs10751959	0.82[ASN][1000 genomes]
rs10795123	0.87[ASN][1000 genomes]
rs10795128	0.83[ASN][1000 genomes]
rs10795129	0.83[ASN][1000 genomes]
rs10795131	0.83[ASN][1000 genomes]
rs10904179	0.87[ASN][1000 genomes]
rs10904183	0.86[ASN][1000 genomes]
rs10904184	0.86[ASN][1000 genomes]
rs10904185	0.85[ASN][1000 genomes]
rs10904186	0.86[ASN][1000 genomes]
rs10904187	0.85[ASN][1000 genomes]
rs11252329	0.86[ASN][1000 genomes]
rs11252331	0.86[ASN][1000 genomes]
rs11252338	0.86[ASN][1000 genomes]
rs11597117	0.85[ASN][1000 genomes]
rs2397408	0.82[ASN][1000 genomes]
rs2894884	0.85[ASN][1000 genomes]
rs4268419	0.85[ASN][1000 genomes]
rs4297363	0.87[ASN][1000 genomes]
rs4298799	0.87[ASN][1000 genomes]
rs4880663	0.87[ASN][1000 genomes]
rs4881282	0.87[ASN][1000 genomes]
rs4881284	0.85[ASN][1000 genomes]
rs4881285	0.86[ASN][1000 genomes]
rs4881286	0.86[ASN][1000 genomes]
rs4881287	0.83[ASN][1000 genomes]
rs6601804	0.87[ASN][1000 genomes]
rs6601805	0.87[ASN][1000 genomes]
rs6601809	0.87[ASN][1000 genomes]
rs7073670	0.86[ASN][1000 genomes]
rs7073684	0.86[ASN][1000 genomes]
rs7073835	0.87[ASN][1000 genomes]
rs7074508	0.85[ASN][1000 genomes]
rs7078368	0.87[ASN][1000 genomes]
rs7089374	0.87[ASN][1000 genomes]
rs7090083	0.86[ASN][1000 genomes]
rs7090084	0.86[ASN][1000 genomes]
rs7090107	0.86[ASN][1000 genomes]
rs7897482	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4129000-4135600	Weak transcription	Ovary	ovary
2	chr10:4129400-4135600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:4132600-4148600	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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