Variant report

Variant	rs488114
Chromosome Location	chr6:74098703-74098704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74094308..74097512-chr6:74097531..74100716,3	K562	blood:
2	chr6:74095378..74098984-chr6:74227536..74229883,3	K562	blood:
3	chr6:74089866..74093831-chr6:74097409..74099741,3	K562	blood:
4	chr6:74096906..74100537-chr6:74170433..74175605,6	K562	blood:
5	chr6:74097324..74100434-chr6:74104936..74106644,3	MCF-7	breast:
6	chr6:74097547..74100838-chr6:74107731..74110706,3	K562	blood:
7	chr6:74098592..74101107-chr6:74230395..74231995,2	K562	blood:
8	chr6:74019710..74020221-chr6:74098174..74099066,2	MCF-7	breast:
9	chr6:73995175..73995795-chr6:74098478..74099056,2	MCF-7	breast:
10	chr6:74097031..74100005-chr6:74170446..74175605,4	K562	blood:
11	chr6:74097102..74099015-chr6:74101639..74104853,3	K562	blood:
12	chr6:74061513..74063742-chr6:74096070..74099036,2	K562	blood:
13	chr6:74036160..74036840-chr6:74098186..74098994,2	MCF-7	breast:
14	chr6:74096785..74099328-chr6:74132836..74134473,2	K562	blood:
15	chr6:73121804..73122448-chr6:74097991..74098928,3	MCF-7	breast:
16	chr6:74083446..74085869-chr6:74096172..74099049,2	K562	blood:
17	6:74000304-74012200..6:74078047-74099067	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000234882	Chromatin interaction
ENSG00000135297	Chromatin interaction
ENSG00000080007	Chromatin interaction
ENSG00000207023	Chromatin interaction
ENSG00000135314	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000238464	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17755984	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs564533	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74097600-74099200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:74098200-74098800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:74098200-74098800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:74098200-74098800	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr6:74098200-74098800	Active TSS	HSMMtube	muscle
6	chr6:74098200-74099000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:74098200-74099000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:74098200-74099000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:74098200-74099000	Active TSS	NH-A	brain
10	chr6:74098200-74099000	Active TSS	NHLF	lung
11	chr6:74098200-74099000	Active TSS	Osteobl	bone
12	chr6:74098200-74099200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:74098200-74099200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:74098200-74099200	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:74098200-74099200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:74098200-74099200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr6:74098200-74099200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:74098200-74099200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:74098200-74099200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:74098200-74099200	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr6:74098200-74099200	Active TSS	Aorta	Aorta
22	chr6:74098200-74099200	Active TSS	Brain Cingulate Gyrus	brain
23	chr6:74098200-74099200	Active TSS	Brain Hippocampus Middle	brain
24	chr6:74098200-74099200	Active TSS	Colon Smooth Muscle	Colon
25	chr6:74098200-74099200	Bivalent/Poised TSS	Fetal Stomach	stomach
26	chr6:74098200-74099200	Active TSS	Rectal Smooth Muscle	rectum
27	chr6:74098200-74099200	Active TSS	Right Atrium	heart
28	chr6:74098200-74099200	Active TSS	Stomach Mucosa	stomach
29	chr6:74098200-74099200	Active TSS	A549	lung
30	chr6:74098200-74099200	Flanking Active TSS	HMEC	breast
31	chr6:74098200-74099200	Active TSS	HSMM	muscle
32	chr6:74098200-74099400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:74098200-74099400	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:74098200-74099400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:74098200-74099400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:74098200-74099400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:74098200-74099400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:74098200-74099400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr6:74098200-74099400	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr6:74098200-74099400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:74098200-74099400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:74098200-74099400	Flanking Active TSS	Liver	Liver
43	chr6:74098200-74099400	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr6:74098200-74099400	Flanking Active TSS	HUVEC	blood vessel
45	chr6:74098200-74099400	Active TSS	NHDF-Ad	bronchial
46	chr6:74098400-74098800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:74098400-74098800	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr6:74098400-74098800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
49	chr6:74098400-74098800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
50	chr6:74098400-74098800	Active TSS	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links