Variant report

Variant	rs4885046
Chromosome Location	chr13:54986863-54986864
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10507587	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1336992	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1618726	0.91[ASN][1000 genomes]
rs2152753	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4885047	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885052	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55964778	0.90[ASN][1000 genomes]
rs7332800	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9316718	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9527204	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9527206	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9536718	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9569031	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv11645	chr13:54981601-54988098	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54982800-54989200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:54983800-54987000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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