Variant report

Variant	rs4885640
Chromosome Location	chr13:80163429-80163430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12877278	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71445304	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7334344	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs7984163	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4885640	RBM26	Cis_1M	lymphoblastoid	RTeQTL
rs4885640	Hs.264076	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80163000-80163600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:80163000-80163600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:80163200-80163800	Enhancers	Adipose Nuclei	Adipose
4	chr13:80163200-80164600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr13:80163400-80163600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:80163400-80163800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:80163400-80163800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:80163400-80163800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:80163400-80163800	Flanking Active TSS	HMEC	breast
10	chr13:80163400-80163800	Flanking Active TSS	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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