Variant report
| Variant | rs4885981 |
|---|---|
| Chromosome Location | chr13:53364443-53364444 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:53362246..53364630-chr13:53365395..53367188,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs186867 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs235784 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs235785 | 0.80[ASN][1000 genomes] |
| rs235786 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs235789 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs377385 | 0.87[ASN][1000 genomes] |
| rs402583 | 0.86[ASN][1000 genomes] |
| rs403759 | 0.87[ASN][1000 genomes] |
| rs403998 | 0.98[ASN][1000 genomes] |
| rs450836 | 0.87[ASN][1000 genomes] |
| rs450898 | 0.87[ASN][1000 genomes] |
| rs455747 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs459664 | 0.83[ASN][1000 genomes] |
| rs464294 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs677790 | 0.84[ASN][1000 genomes] |
| rs7990605 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9316586 | 0.84[ASN][1000 genomes] |
| rs9527009 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9527010 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9536285 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9536286 | 0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9536287 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530719 | chr13:53173014-53675953 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | esv3440613 | chr13:53307609-53671072 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv561655 | chr13:53357923-53366885 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv561659 | chr13:53358598-53367433 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv1054476 | chr13:53359853-53380149 | Bivalent Enhancer Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53362600-53364800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr13:53364200-53365000 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
