Variant report

Variant	rs4886854
Chromosome Location	chr15:77476041-77476042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr15:77475987-77476065	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PEAK1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4886510	1.00[ASW][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4886512	1.00[AFR][1000 genomes]
rs4886851	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77451000-77478800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:77451200-77491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:77460800-77479200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:77461600-77496800	Weak transcription	Lung	lung
5	chr15:77465200-77477000	Weak transcription	Gastric	stomach
6	chr15:77465400-77488200	Weak transcription	Psoas Muscle	Psoas
7	chr15:77466200-77479000	Weak transcription	Brain Anterior Caudate	brain
8	chr15:77466200-77479400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:77467200-77491400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:77469000-77480200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:77469400-77483800	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:77469800-77491200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:77469800-77499200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:77471000-77479000	Weak transcription	Brain Angular Gyrus	brain
15	chr15:77471000-77482600	Weak transcription	Fetal Brain Male	brain
16	chr15:77471400-77505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:77471600-77479200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:77471600-77481600	Weak transcription	Pancreas	Pancrea
19	chr15:77471800-77481400	Weak transcription	Spleen	Spleen
20	chr15:77471800-77482000	Weak transcription	Colonic Mucosa	Colon
21	chr15:77471800-77491400	Weak transcription	Aorta	Aorta
22	chr15:77472000-77479200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:77472000-77479200	Weak transcription	NHLF	lung
24	chr15:77472200-77476200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:77472200-77479200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:77472200-77479400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:77472200-77480000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:77472400-77500800	Weak transcription	HSMMtube	muscle
29	chr15:77472600-77476600	Weak transcription	Stomach Mucosa	stomach
30	chr15:77472800-77477200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:77472800-77477400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:77472800-77477600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:77472800-77479600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:77472800-77480000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:77473000-77476200	Weak transcription	HepG2	liver
36	chr15:77473000-77478600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:77473000-77483600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:77473200-77477800	Weak transcription	Brain Substantia Nigra	brain
39	chr15:77473200-77477800	Weak transcription	Fetal Intestine Small	intestine
40	chr15:77473200-77478400	Weak transcription	Fetal Intestine Large	intestine
41	chr15:77473400-77477800	Weak transcription	Fetal Lung	lung
42	chr15:77473400-77479200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:77473400-77479200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:77473600-77477600	Weak transcription	HUVEC	blood vessel
45	chr15:77473600-77479000	Weak transcription	Brain Hippocampus Middle	brain
46	chr15:77473600-77479000	Weak transcription	Small Intestine	intestine
47	chr15:77473600-77479800	Weak transcription	Right Atrium	heart
48	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
49	chr15:77473800-77478800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:77474000-77477800	Weak transcription	Dnd41	blood

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