Variant report

Variant	rs4888553
Chromosome Location	chr16:76835284-76835285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11149920	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11149921	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11149922	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11863429	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11864578	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11864582	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12325051	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12597448	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3924381	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4243131	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4243132	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4254353	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4300674	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4445928	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4517824	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4569313	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4592690	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4888549	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4888550	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4888552	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897689	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55978528	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56075616	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56826752	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57091947	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57190752	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58214427	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59673213	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60216700	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61607439	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6564364	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66464908	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66506855	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66521224	0.80[AFR][1000 genomes]
rs67384742	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67417763	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67923379	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7186986	0.89[ASN][1000 genomes]
rs7197007	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7201147	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7498467	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7498635	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8045698	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8050208	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8054883	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8056279	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8062061	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8062254	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8062436	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063069	chr16:76462850-77214064	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv542963	chr16:76462850-77214064	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv573047	chr16:76540798-76881625	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2422474	chr16:76544108-77125562	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1056946	chr16:76599511-77084651	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1060132	chr16:76640155-77057830	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	nsv906947	chr16:76682263-77160626	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
8	esv2754946	chr16:76710087-76850338	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv869201	chr16:76714549-77233646	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
10	esv2830265	chr16:76722500-76844155	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1065850	chr16:76766096-76889490	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1063345	chr16:76766096-76891460	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv457539	chr16:76777664-77081676	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
14	nsv573073	chr16:76777664-77081676	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
15	esv2761915	chr16:76782108-76874387	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76824200-76838800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:76835200-76838400	Weak transcription	HMEC	breast

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