Variant report
| Variant | rs4889051 |
|---|---|
| Chromosome Location | chr16:79982259-79982260 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10514474 | 1.00[ASN][1000 genomes] |
| rs4340341 | 1.00[ASN][1000 genomes] |
| rs4627372 | 1.00[ASN][1000 genomes] |
| rs4888059 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4888060 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4888061 | 1.00[ASN][1000 genomes] |
| rs4889050 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4889052 | 1.00[ASN][1000 genomes] |
| rs4889054 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4889056 | 1.00[ASN][1000 genomes] |
| rs4889059 | 1.00[ASN][1000 genomes] |
| rs59235092 | 0.93[ASN][1000 genomes] |
| rs7205811 | 0.84[AFR][1000 genomes] |
| rs8060541 | 0.84[AFR][1000 genomes] |
| rs8063012 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9673722 | 1.00[ASN][1000 genomes] |
| rs9673796 | 1.00[ASN][1000 genomes] |
| rs9674019 | 1.00[ASN][1000 genomes] |
| rs9674058 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1061519 | chr16:79976222-79987278 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:79981200-79982400 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
