Variant report

Variant	rs4889406
Chromosome Location	chr16:81851736-81851737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81851613..81854068-chr16:81882143..81884584,2	K562	blood:
2	chr16:81849121..81851772-chr16:81861664..81863431,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4243215	1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs4889393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6564925	0.85[TSI][hapmap]
rs7405103	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8044282	0.85[TSI][hapmap]
rs9746892	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9933031	0.85[TSI][hapmap]
rs9940492	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1067307	chr16:81832031-81851736	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81843200-81858200	Weak transcription	Fetal Intestine Small	intestine
2	chr16:81847200-81852000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr16:81848600-81851800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr16:81848800-81853400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr16:81849000-81852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:81849000-81858800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr16:81849200-81851800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr16:81849200-81854600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr16:81849400-81852000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr16:81849400-81854800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr16:81849400-81854800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr16:81849400-81854800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr16:81849400-81855000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr16:81849400-81855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:81849400-81855000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:81849400-81855600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr16:81850400-81851800	Flanking Active TSS	GM12878-XiMat	blood
18	chr16:81850400-81852600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr16:81850400-81852800	Enhancers	Fetal Thymus	thymus
20	chr16:81850400-81852800	Enhancers	Lung	lung
21	chr16:81850600-81852200	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr16:81850600-81852800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr16:81850600-81855400	Enhancers	Primary hematopoietic stem cells	blood
24	chr16:81850800-81851800	Enhancers	Primary B cells from peripheral blood	blood
25	chr16:81850800-81852400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr16:81850800-81868200	Weak transcription	Esophagus	oesophagus
27	chr16:81851000-81851800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr16:81851000-81851800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr16:81851000-81852400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr16:81851400-81852000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr16:81851400-81852200	Enhancers	Right Atrium	heart
32	chr16:81851400-81852400	Enhancers	Duodenum Mucosa	Duodenum
33	chr16:81851600-81852400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr16:81851600-81853000	Enhancers	Spleen	Spleen
35	chr16:81851600-81854000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr16:81851600-81855000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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