Variant report

Variant	rs4889448
Chromosome Location	chr16:81985595-81985596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12925104	0.80[JPT][hapmap]
rs4508413	0.90[CHD][hapmap];0.94[JPT][hapmap]
rs4519328	0.84[JPT][hapmap]
rs8055043	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs9932871	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059532	chr16:81981559-81995177	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
3	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
4	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
5	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
6	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
7	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
8	chr16:81982000-81985600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr16:81982000-81986800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr16:81982400-81987000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:81982600-81990200	Weak transcription	Lung	lung
12	chr16:81982600-81991200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:81982600-81996600	Weak transcription	Fetal Stomach	stomach
14	chr16:81982600-82007000	Weak transcription	Gastric	stomach
15	chr16:81984600-81985600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:81984600-81985600	ZNF genes & repeats	Liver	Liver
17	chr16:81984600-81985600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr16:81984600-81985600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr16:81985000-81988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:81985000-81989000	Weak transcription	Spleen	Spleen
21	chr16:81985000-81989600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr16:81985000-81992600	Weak transcription	Placenta	Placenta
23	chr16:81985000-81993800	Weak transcription	Fetal Intestine Small	intestine
24	chr16:81985000-81994400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr16:81985000-81995200	Weak transcription	Left Ventricle	heart
26	chr16:81985000-81995600	Strong transcription	GM12878-XiMat	blood
27	chr16:81985400-81985800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr16:81985400-81986200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr16:81985400-81987800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr16:81985400-81989400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr16:81985400-81989600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr16:81985400-81990000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr16:81985400-81991000	Weak transcription	Adipose Nuclei	Adipose
34	chr16:81985400-81994000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr16:81985400-81994800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr16:81985400-81995600	Strong transcription	Primary B cells from cord blood	blood

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