Variant report

Variant	rs4889639
Chromosome Location	chr16:31261778-31261779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31260386..31262455-chr16:31263713..31265453,2	MCF-7	breast:
2	chr16:31190132..31192875-chr16:31260964..31263392,3	K562	blood:
3	chr16:31252663..31255593-chr16:31260299..31264872,4	MCF-7	breast:
4	chr16:31247262..31249544-chr16:31259534..31262462,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089280	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10438639	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11641624	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11645526	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11865830	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1808430	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2011491	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2359661	0.82[ASN][1000 genomes]
rs3764327	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3815801	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4447446	0.82[ASN][1000 genomes]
rs4561481	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4889640	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60660286	0.86[ASN][1000 genomes]
rs6565225	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7193943	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7196256	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7499192	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8044075	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8047985	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8048583	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8051304	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8057320	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8062426	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs889549	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs889551	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs929868	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9923270	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9938177	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31250400-31262600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:31256600-31264000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:31256600-31264200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr16:31258000-31263400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr16:31260400-31265000	Weak transcription	NHEK	skin
6	chr16:31261200-31264400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr16:31261200-31264600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr16:31261600-31262000	Weak transcription	K562	blood

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