The 2.0 version of rSNPBase

Variant report

Variant rs4894023
Chromosome Location chr2:179331522-179331523
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179316800-179338200 Weak transcription Fetal Stomach stomach
2 chr2:179316800-179338800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr2:179316800-179341800 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr2:179316800-179342400 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr2:179316800-179342600 Weak transcription Aorta Aorta
6 chr2:179316800-179342800 Weak transcription Brain Cingulate Gyrus brain
7 chr2:179317000-179342000 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr2:179317200-179342800 Weak transcription Brain Hippocampus Middle brain
9 chr2:179317400-179341200 Weak transcription Colon Smooth Muscle Colon
10 chr2:179317400-179341600 Weak transcription GM12878-XiMat blood
11 chr2:179317800-179338200 Weak transcription Osteobl bone
12 chr2:179318000-179332400 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr2:179318000-179334200 Weak transcription Fetal Kidney kidney
14 chr2:179318000-179342800 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr2:179321200-179342400 Weak transcription HSMM muscle
16 chr2:179321200-179342400 Weak transcription HSMMtube muscle
17 chr2:179322800-179339000 Weak transcription Muscle Satellite Cultured Cells --
18 chr2:179324600-179338200 Weak transcription Fetal Brain Male brain
19 chr2:179325000-179338800 Weak transcription Left Ventricle heart
20 chr2:179325200-179332200 Weak transcription Fetal Intestine Large intestine
21 chr2:179325600-179342000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr2:179325800-179338800 Weak transcription Stomach Smooth Muscle stomach
23 chr2:179326200-179342000 Weak transcription Cortex derived primary cultured neurospheres brain
24 chr2:179326200-179342400 Weak transcription Adipose Nuclei Adipose
25 chr2:179326200-179342600 Weak transcription Primary T cells from cord blood blood
26 chr2:179327000-179342400 Weak transcription Rectal Smooth Muscle rectum
27 chr2:179327200-179341800 Weak transcription NHLF lung
28 chr2:179327200-179342400 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr2:179327400-179338200 Weak transcription Right Ventricle heart
30 chr2:179327400-179341800 Weak transcription HUVEC blood vessel
31 chr2:179327800-179332400 Weak transcription Brain Germinal Matrix brain
32 chr2:179327800-179338800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr2:179328200-179342600 Weak transcription Fetal Thymus thymus
34 chr2:179328200-179342600 Weak transcription Placenta Amnion Placenta Amnion
35 chr2:179328400-179335200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr2:179328800-179335200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr2:179329000-179333000 Strong transcription Liver Liver
38 chr2:179329000-179335200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr2:179329000-179335200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr2:179329200-179334600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr2:179329200-179335000 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr2:179329400-179335200 Strong transcription Fetal Lung lung
43 chr2:179329600-179331600 Weak transcription Primary B cells from cord blood blood
44 chr2:179330000-179331600 Weak transcription Fetal Brain Female brain
45 chr2:179330000-179332200 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr2:179330400-179331600 Weak transcription Fetal Muscle Leg muscle
47 chr2:179330400-179338600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr2:179330400-179341800 Weak transcription NH-A brain
49 chr2:179330400-179342000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr2:179330600-179332400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015