Variant report

Variant	rs4894213
Chromosome Location	chr2:177770953-177770954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10183398	0.94[ASN][1000 genomes]
rs10930769	0.89[EUR][1000 genomes]
rs11892660	0.94[ASN][1000 genomes]
rs13398923	0.94[ASN][1000 genomes]
rs1358293	0.94[ASN][1000 genomes]
rs1358295	0.94[ASN][1000 genomes]
rs16864744	0.93[EUR][1000 genomes]
rs4894220	0.91[EUR][1000 genomes]
rs4894221	0.90[EUR][1000 genomes]
rs6707630	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6715148	0.90[EUR][1000 genomes]
rs6737247	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs73033032	0.94[ASN][1000 genomes]
rs73035099	0.90[EUR][1000 genomes]
rs7562648	0.94[ASN][1000 genomes]
rs7577255	0.90[EUR][1000 genomes]
rs7603168	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875448	chr2:177760005-177819108	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177770400-177771000	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links