Variant report

Variant	rs4894288
Chromosome Location	chr3:134908343-134908344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1159403	1.00[AMR][1000 genomes]
rs2400444	1.00[AMR][1000 genomes]
rs905049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134885600-134911800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:134885600-134912200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134887600-134911400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:134888200-134908600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:134889000-134910200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:134889000-134924600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:134895800-134912000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:134901600-134910000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:134901800-134911400	Weak transcription	Fetal Brain Female	brain
10	chr3:134906600-134909600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:134907000-134910000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:134907200-134913400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:134907400-134922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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