Variant report

Variant	rs4895160
Chromosome Location	chr5:119853727-119853728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:119852123..119854010-chr5:120038446..120041236,2	K562	blood:
2	chr5:119851956..119854339-chr5:119862015..119863785,2	K562	blood:
3	chr5:119852641..119855403-chr5:119858663..119861465,3	K562	blood:
4	chr5:119801016..119803100-chr5:119851238..119853983,3	K562	blood:

Variant related genes	Relation type
ENSG00000184838	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10035683	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10052315	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052334	0.89[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064623	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065330	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10214171	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477605	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478471	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478472	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478474	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519636	0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11949016	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957506	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958925	0.91[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960555	1.00[CEU][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12109423	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356306	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356782	0.91[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357191	1.00[ASN][1000 genomes]
rs13359288	1.00[ASN][1000 genomes]
rs13359350	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360299	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361121	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13362523	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146733	0.82[CEU][hapmap]
rs17491078	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2604164	1.00[ASN][1000 genomes]
rs4476747	0.84[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895159	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895257	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895258	0.91[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895259	0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595236	0.84[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6595239	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871554	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888327	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs73264200	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266107	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7448156	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702580	0.85[CEU][hapmap]
rs7706025	0.90[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710626	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710848	0.84[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710928	0.83[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712847	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728098	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733397	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327144	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs9327146	0.92[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462427	chr5:119838923-119928674	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599601	chr5:119838923-119928674	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119839800-119879800	Weak transcription	Psoas Muscle	Psoas
2	chr5:119844200-119864200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:119852200-119853800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:119852200-119854000	Enhancers	NH-A	brain
5	chr5:119852200-119854600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:119852200-119854600	Enhancers	Osteobl	bone
7	chr5:119852200-119855000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:119852400-119853800	Enhancers	HSMMtube	muscle
9	chr5:119852400-119853800	Enhancers	NHLF	lung
10	chr5:119852400-119854600	Enhancers	K562	blood
11	chr5:119852800-119854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:119852800-119854000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:119853200-119863000	Weak transcription	HSMM	muscle
14	chr5:119853400-119864000	Weak transcription	NHDF-Ad	bronchial
15	chr5:119853600-119853800	Enhancers	Aorta	Aorta

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